Xenium Lung Cancer Spatial Pipeline From the raw 10x Xenium bundle to a stress-tested map of the tumour immune microenvironment · 377-gene panel, lung adenocarcinoma FFPE 162,254 cells detected → 154,394 after QC → 139,129 high-confidence cells in 33 types · 15 Snakemake rules · one ist_analysis package shared by notebooks and pipeline MD Shakhaowat Hossain · PhD Candidate, Tulane University School of Medicine · data: 10x Genomics (CC BY 4.0), LuCA (Salcher et al. 2022)